Poster Programme – German Conference on Bioinformatics

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List of posters

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Code	Title
P01	A network medicine approach for identifying diagnostic and prognostic biomarkers and exploring drug repurposing in human cancer Poster Bioinformatics X. Lai Presenter BioMediTech, Faculty of Medicine and Health Technology, Tampere University, Tampere, FinlandJ. Vera Laboratory of Systems Tumor Immunology, Department of Dermatology, Universitätsklinikum Erlangen and Friedrich-Alexander-Universität Erlangen- Nürnberg, Erlangen, Germany
P02	Untangling the Knot: Machine Learning Uncovers Knotted Patterns in Protein Structures Poster Bioinformatics E. Klimentová Presenter CEITEC MU
P03	Accessible and scalable pipelines for fast and easy (foodborne) pathogens detection and tracking Poster Bioinformatics E. Nasr Presenter Albert-Ludwigs-Universität FreiburgA. Henger Biolytix AGT. Schindler Amplytico gmbhB. Grüning Albert-Ludwigs-Universität FreiburgB. Batut Albert-Ludwigs-Universität Freiburg
P04	ENQUIRE Reconstructs and Expands Gene and MeSH Networks from Literature, by Querying Unexpectedly Interrelated Entities Poster Bioinformatics L. Musella Presenter Friedrich-Alexander University (FAU) Erlangen-Nürnberg and Universitätsklinikum Erlangen
P05	An M for an A: Using Bioinformatics to characterize DNA methyltransferase specificities through the utilization of MALDI-TOF and sequencing methodologies. Poster Bioinformatics J. Otto Uni JenaN. Ueberschaar Uni JenaV. Wesp Uni JenaG. Pohnert Uni JenaM. Bauer University Hospital JenaA. Busch Presenter Uni Jena
P06	Towards reliable prediction of significant changes in microbial communities based on time series data Poster Bioinformatics A. Dörr Presenter Universität Duisburg Essen
P07	Interpretable deep learning models for elucidating the complex cis-regulatory code of model plant species Poster Bioinformatics F. Peleke Presenter Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK)S. Zumkeller Institute of Bio- and Geosciences, IBG-4: Plant Sciences, Forschungszentrum JülichJ. Symanski Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)
P08	Microbiome data analysis using the Galaxy platform Poster Bioinformatics P. Zierep Presenter Albert-Ludwigs-University FreiburgB. Batut Albert-Ludwigs-University FreiburgE. Nasr Albert-Ludwigs-University FreiburgB. Grüning Albert-Ludwigs-University Freiburg
P09	Network-based analysis of heterogeneous patient-matched brain and extracranial melanoma metastases pairs reveals three homogeneous subgroups Poster Bioinformatics K. Grützmann Presenter Technische Universität DresdenT. Kraft Technische Universität DresdenM. Meinhardt University Hospital DresdenD. Westphal University Hospital DresdenM. Seifert Technische Universität Dresden
P10	Interactive visualization and exploratory data analysis of variant call matrices with DivBrowse Poster Bioinformatics P. König Presenter Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)S. Beier Forschungszentrum Jülich GmbHM. Mascher Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)N. Stein Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)M. Lange Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)U. Scholz Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)
P11	Which collagen types can crosslink with each other? Poster Bioinformatics V. Wesp Presenter Friedrich-Schiller-University JenaL. Scholz Friedrich-Schiller-University JenaS. Schuster Friedrich-Schiller-University JenaH. Stark Friedrich-Schiller-University Jena
P12	Inverse folding based pre-training for the reliable identification of intrinsic transcription terminators Poster Bioinformatics V. Brandenburg Presenter Ruhr-University BochumF. Narberhaus Ruhr-University BochumA. Mosig Ruhr-University Bochum
P13	Combining data analysis strategies to identify gene targets for the optimisation of production cell lines Poster Bioinformatics M. Rattay Presenter Sartorius Stedim Cellca GmbHS. Pijeaud Sartorius Stedim Cellca GmbHA. Antonakoudis Sartorius Stedim UK Ltd.P. Jonsson Sartorius Stedim Data Analytics ABO. Cloarec Sartorius Stedim France S.A.SA. Richelle Sartorius Stedim Belgium S.A.
P14	MANTRA: Metabolic-Network Analysis to Identify Changes in Reaction Activity Poster Bioinformatics N. Köhler Presenter Technical University of MunichV. Würf Technical University of MunichJ. Pauling Technical University of Munich
P15	Synechocystis sp. PCC 6803 photosynthesis under different light colours - in silico analysis Poster Bioinformatics T. Pfennig Presenter RWTH Aachen UniversityE. Kullmann RWTH Aachen UniversityG. Bernát Centre for Ecological ResearchJ. Červený Czech Academy of SciencesO. Ebenhöh Heinrich Heine University DüsseldorfT. Zavřel Czech Academy of SciencesA. Matuszyńska RWTH Aachen University
P16	Motif mining with deep learning tools is accelerating identification, annotation and inference of gene regulatory networks in plants Poster Bioinformatics S. Zumkeller Presenter Forschungszentrum JuelichF. Peleke Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)J. Engelhorn Max-Planck-Institut für PflanzenzüchtungsforschungT. Hartwig Max-Planck-Institut für PflanzenzüchtungsforschungJ. Szymański Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)
P17	RNAIntels: A machine learning-based tool for the identification of coding and noncoding small RNAs in human RNA-seq data Poster Bioinformatics O. Sarumi Presenter Philipps University of MarburgD. Heider Philipps University of MarburgR. Martin Philipps University of Marburg
P18	Deciphering key regulatory networks and drug repurposing candidates through scRNAseq data analysis using SCANet Poster Bioinformatics M. Oubounyt Presenter University of Hamburg
P19	ChimericFragments: A visual approach to the analysis of global RNA-RNA interaction networks Poster Bioinformatics M. Siemers Presenter Friedrich-Schiller-University JenaA. Lippegaus Friedrich-Schiller-University JenaK. Papenfort Friedrich-Schiller-University Jena
P20	Is BLAST a thing of the past? Poster Bioinformatics M. Schroeder Presenter TU Dresden
P21	Searching for orthologs in un-annotated genome assemblies with fDOG–Assembly Poster Bioinformatics H. Muelbaier Presenter Goethe UniversityM. Bálint Senckenberg Biodiversity and Climate Research CentreI. Ebersberger Goethe University
P22	Unraveling the complexity of the gut microbiota in liver cirrhosis Poster Bioinformatics K. Tsenova Presenter Goethe University, FrankfurtJ. Ackermann Goethe University, FrankfurtM. Vehreschild University Hospital FrankfurtI. Koch Goethe University, Frankfurt
P23	Plant growth and survival as a real-time strategy game Poster Bioinformatics D. Koch Leibniz Institute of Plant Genetics and Crop Plant ResearchS. Camborda University of Cologne, CEPLASN. Töpfer University of Cologne, CEPLASJ. Szymański Presenter Leibniz Institute of Plant Genetics and Crop Plant Research
P24	DataSAIL: Data Splitting Against Information Leakage Poster Bioinformatics R. Joeres Presenter HZI/HIPSA. Gress HZI/HIPSA. Tolkmitt HZI/HIPSI. Senatorov HZI/HIPSO. Kalinina HZI/HIPS
P26	Missing data imputation leads to wrong statistical interference in metabolomics data analysis Poster Bioinformatics M. Burdukiewicz Presenter Medical University of Białystok
P27	Analysis of expression patterns with fuzzy concepts as FlowSets Poster Bioinformatics M. Joppich Presenter Ludwig-Maximilians-Universität MünchenF. Offensperger Ludwig-Maximilians-Universität MünchenR. Zimmer Ludwig-Maximilians-Universität München
P28	Mining structured biomedical resources to systematically identify disease signatures from single-cell data Poster Bioinformatics S. Hayat Presenter Uniklinik RWTH AachenM. Joppich Presenter Ludwig-Maximilians-Universität MünchenR. Kramann Uniklinik RWTH Aachen
P29	Standardizing and harmonizing NGS analysis workflows in the German Human Genome-Phenome Archive (GHGA) – A national secure infrastructure for omics data Poster Bioinformatics K. Narcı Presenter German Cancer Research Institute (DKFZ)
P30	Onkopus: A Decision Support Framework for Evidence- Based Interpretation of Biomarkers in Cancer Research and Precision Medicine Poster Bioinformatics N. Kurz Presenter University Medical Center GöttingenK. Kornrumpf University Medical Center GöttingenT. Tucholski University Medical Center GöttingenV. Gnass University Medical Center GöttingenK. Drofenik University Medical Center GöttingenT. Beissbarth University Medical Center GöttingenJ. Dönitz University Medical Center Göttingen
P31	An M for an A: Using Bioinformatics to characterize DNA methyltransferase specificities through the utilization of HPLC-HESI-MS and sequencing methodologies. Poster Bioinformatics A. Busch Presenter Uni Jena/TME
P32	Inference of metabolic properties and transcriptional programmes across altered adipocyte/immune cell ratios Poster Bioinformatics V. Zouboulis Presenter University Medical Center Hamburg-Eppendorf (UKE)H. Ulrich University Medical Center Hamburg-Eppendorf (UKE)C. Kilian University Medical Center Hamburg-Eppendorf (UKE)L. Adlung University Medical Center Hamburg-Eppendorf (UKE)
P33	Holomics: an R Shiny application for the holistic integration and analysis of multiple omics data Poster Bioinformatics K. Munk AIT Austrian Institute of TechnologyG. Brader AIT Austrian Institute of TechnologyE. Molin Presenter AIT Austrian Institute of Technology
P34	Understanding Tomato Heat Response: A large-scale Transcriptomic Meta-Analysis Poster Bioinformatics D. Psaroudakis Presenter IPK GaterslebenA. Khayer IPK GaterslebenL. Aiyesa IPK GaterslebenA. Tissier IPB HalleL. Yunlong IGZ GroßbeerenP. Wigge IGZ GroßbeerenA. Israeli HUJI JerusalemN. Teboul HUJI JerusalemJ. Szymanski IPK Gatersleben
P35	Detection of genome rearrangements responsible for microbial phenotype switching Poster Bioinformatics O. Bochkareva Presenter UniWien
P36	Consideration of spatial constraints improves prediction of photosynthetic metabolism Poster Bioinformatics T. Machado Presenter University of CologneN. Töpfer University of Cologne
P37	Nanopore sequencing: A guidance and most common pitfalls stepping into Nanopore Sequencing Poster Bioinformatics D. Meyer Presenter Friedrich-Schiller-Universität JenaD. Wollny Friedrich-Schiller-Universität JenaM. Marz Friedrich-Schiller-Universität Jena
P38	The evolution of the de.NBI / ELIXIR-DE training platform in 2023 Poster Bioinformatics D. Wibberg Presenter Forschungszentrum Jülich GmbH - Außenstelle Universität BielefeldN. Lübke Forschungszentrum Jülich GmbH - Außenstelle Universität BielefeldH. Schnitzer Forschungszentrum Jülich GmbH - Außenstelle Universität Bielefeld
P39	The ELIXIR Research Data Management (RDM) Trainer Network - Developing training and sharing knowledge, best practices, and standards Poster Bioinformatics H. Schnitzer Presenter Forschungszentrum Jülich GmbHX. Pérez Sitjà University of BradfordN. Fatima University of OsloR. Andrews Cardiff UniversityN. Lübke Forschungszentrum Jülich GmbHK. Poterlowicz University of BradfordD. Wibberg Forschungszentrum Jülich GmbH
P40	From genes to clinically actionable hypotheses Poster Bioinformatics A. Maier University of HamburgM. Hartung Presenter University of HamburgM. List Technical University MunichO. Zolotareva University of HamburgJ. Baumbach University of Hamburg
P41	Interpretable deep learning models for elucidating the complex cis-regulatory code of model plant species Poster Bioinformatics F. Peleke Presenter Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK)S. Zumkeller Institute of Bio- and Geosciences, IBG-4: Plant Sciences, Forschungszentrum JülichJ. Symanski Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)
P42	NeDRex - an integrative and interactive network medicine platform for drug repurposing Poster Bioinformatics A. Maier Presenter University of HamburgS. Sadegh University of HamburgJ. Skelton Newcastle UniversityJ. Baumbach Universität Hamburg
P43	In silico characterization of Plasmodium PfMYST complex and identification of novel antimalarial compounds against its catalytic HAT protein PfMYST Poster Bioinformatics J. Khurana Presenter Shiv Nadar Institution of EminenceA. Gupta Shiv Nadar Institution of Eminence
P44	Interrogating intra-cellular and inter-patient heterogeneity of tumor cells in Glioblastoma PDOXs upon treatment by using longitudinal scRNA-seq data Poster Bioinformatics B. Nosirov Presenter Luxembourg Institute of HealthY. Yabo Luxembourg Institute of HealthA. Oudin Luxembourg Institute of HealthK. Grzyb University of LuxembourgT. Kaoma Luxembourg Institute of HealthA. Skupin University of LuxembourgS. Niclou University of LuxembourgP. Nazarov Luxembourg Institute of HealthA. Golebiewska Luxembourg Institute of Health
P45	Virtual screening of cyclooxygenase inhibitors from Tinospora cordifolia using the machine learning tool Poster Bioinformatics A. Karlapudi Presenter Vignan's Foundation for science Technology and Research
P46	Unveiling Novel Therapeutic Strategies for Lymphatic Filariasis: A Pan-Proteomic Exploration and Inhibitor Design Paradigm[o Poster Bioinformatics R. Nalamolu Presenter Vignan's Foundation for science Technology and ResearchA. Mathe Vignan's Foundation for science Technology and ResearchS. Katari Vignan's Foundation for science Technology and Research
P47	Computational Analysis of Bone-resident Mesenchymal Stromal Cells Identifies Transcriptional Cell State Shift During Ageing Poster Bioinformatics M. Leer Presenter German Institute of Human Nutrition Potsdam-Rehbruecke (DIfE)G. Soultoukis German Institute of Human Nutrition Potsdam-Rehbruecke (DIfE)T. Schulz German Institute of Human Nutrition Potsdam-Rehbruecke (DIfE)
P48	MOLECULAR DOCKING OF LEGIONELLA PNEUMOPHILIA IN HUMAN RAB8A TYPE PROTEIN AND HUMAN NK 1 PROTEIN FRAGMENTS (PEPTIDES) AGAINST BRAC 1 PROTEIN Poster Bioinformatics N. Jahan Presenter Jahangirnagar university
P49	Identifying Phylum Specific Adaptions to Nutrient Level Modulation Using Metagenome Assembled Genomes from European Freshwaters Poster Bioinformatics M. Shah Presenter University of Duisburg-EssenT. Bornemann University of Duisburg-EssenJ. Nuy University of Duisburg-EssenA. Probst University of Duisburg-EssenM. Hahn University of InnsbruckD. Beisser Westphalian University of Applied SciencesJ. Boenigk University of Duisburg-Essen
P50	Identification of genome-wide expression differences between patient-matched intra- and extracranial melanoma metastasis pairs using Hidden Markov Models Poster Bioinformatics T. Kraft Presenter TU DresdenK. Grützmann TU DresdenM. Meinhardt University Hospital DresdenF. Meier University Hospital DresdenD. Westphal University Hospital DresdenM. Seifert TU Dresden
P51	Gaining a deeper understanding of acute-on-chronic liver failure by analyzing the JAK-STAT pathway in hepatocytes using ODE and Petri net models Poster Bioinformatics M. Keßler Presenter Goethe-Universität Frankfurt am MainJ. Ackermann Goethe-Universität Frankfurt am MainS. Henninger Goethe-Universität Frankfurt am MainL. Klemt Goethe-Universität Frankfurt am MainC. Welsch Goethe-Universität Frankfurt am MainH. Mühl Goethe-Universität Frankfurt am MainI. Koch Goethe-Universität Frankfurt am Main
P52	Calculate polygenic score from matrix factorization Poster Bioinformatics V. Dang Presenter Saarland UniversityS. Rahmann Saarland University
P53	Employing machine learning on large scale perturbation screens for SARS-CoV-2 host factors identifies PRI-724 interfering β-catenin/CBP interaction as a new antiviral Poster Bioinformatics M. Kelch Goethe University Frankfurt am MainA. Vera-Guapi Goethe University, FrankfurtT. Beder University Hospital Schleswig-HolsteinM. Oswald Jena University HospitalA. Hiemisch Jena University HospitalN. Beil Heidelberg UniversityP. Wajda Heidelberg UniversityS. Ciesek Goethe University, FrankfurtH. Erfle Heidelberg UniversityT. Toptan-Grabmair Goethe University, FrankfurtR. Koenig Presenter Jena University Hospital
P54	Using graph topology and transcriptome data of Neuroblastoma for the prediction of Ganglioside GD2 across tumor entities Poster Bioinformatics A. Ustjanzew Presenter University Medical Center of the Johannes Gutenberg-University MainzR. Sandhoff Lipid Pathobiochemistry, German Cancer Research CenterC. Paret University Medical Center of the Johannes Gutenberg-University Mainz
P55	Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic Poster Bioinformatics A. Ibrahim Presenter Leibniz Institute for Natural Product Research and Infection Biology
P56	Dual Annealing: A Promising Novel Global Optimization Method in the Systems Biology and Epidemiology Modelling Poster Bioinformatics Y. Xiang Presenter Philip Morris Products S.A.S. Gubian Philip Morris Products S.A.F. Calvino-Martin Philip Morris Products S.A.
P57	Systematic evaluation of differential splicing tools for single-cell RNA-sequencing Poster Bioinformatics T. Duez Presenter Institute for Computational Systems BiologyO. Tsoy Institute for Computational Systems Biology
P58	dsLassoCov: a federated Lasso approach incorporating covariate control Poster Bioinformatics H. Cao Presenter Department of Theoretical Neuroscience, Central Institute of Mental Health, Medical Faculty, Heidelberg University, GermanyA. Anguita ISGlobal, Barcelona, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain; CIBER Epidemiologa y Salud Pública, Madrid, SpainX. Basagaña ISGlobal, Barcelona, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain; CIBER Epidemiologa y Salud Pública, Madrid, Spain.E. Schwarz Department of Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty, Heidelberg University
P59	Binding motifs are highly conserved in related transcription factors in plants Poster Bioinformatics S. Zenker Presenter Bielefeld UniversityD. Wulf Bielefeld UniversityA. Bräutigam Bielefeld University
P60	Promiscuity in drug discovery on the verge of the structural revolution Poster Bioinformatics S. Bolz Presenter Technische Universität DresdenM. Schroeder Technische Universität Dresden
P61	CLARUS: An Interactive Explainable AI Platform for Manual Counterfactuals in Graph Neural Networks Poster Bioinformatics J. Metsch Presenter University Medical Center Göttingen (UMG)A. Saranti University of Natural Resources and Life Sciences ViennaA. Angerschmid University of Natural Resources and Life Sciences ViennaB. Pfeifer Medical University GrazV. Klemt Philipps University MarburgA. Holzinger University of Natural Resources and Life Sciences ViennaA. Hauschild University Medical Center Göttingen (UMG)
P62	Repurposing of approved drugs as candidates for the treatment of kala-azar: a computational study on Rab5a and PTR1 from Leishmania donovani as targets Poster Bioinformatics B. Arsić Presenter Department of Chemistry, Faculty of Sciences and Mathematics, University of Niš, Višegradska 33J. Janjić Faculty of Biology, University of Belgrade, Studentski trg 16J. Milićević Laboratory for Bioinformatics and Computational Chemistry, Vinča Institute of Nuclear Sciences, University of Belgrade, Mike Petrovića Alasa 12-14S. Glišić Laboratory for Bioinformatics and Computational Chemistry, Vinča Institute of Nuclear Sciences, University of Belgrade, Mike Petrovića Alasa 12-14
P63	FRED – A tool to generate FAIR metadata for omics experiments Poster Bioinformatics J. Walter Presenter Max Planck Institute for Heart and Lung ResearchM. Looso Max Planck Institute for Heart and Lung ResearchC. Kuenne Max Planck Institute for Heart and Lung Research
P64	FACT: Federated Adversarial Cross Training Poster Bioinformatics S. Schrod University Medical Center Göttingen (UMG)J. Lippl Presenter University Medical Center Göttingen (UMG)A. Schäfer Universität RegensburgM. Altenbuchinger University Medical Center Göttingen (UMG)
P65	Unraveling the Influence of Organic and Inorganic Model Aerosols on Lung Surfactant Membrane Poster Bioinformatics D. Mohammad-Aghaie Presenter Shiraz University of TechnologyS. Boroomand Shiraz University of TechnologyF. Keshavarz Lappeenranta-Lahti University of Technology (LUT)
P66	Systematic Evaluation of Normalization Approaches on Tandem Mass Tag and Label-Free Protein Quantification Data Poster Bioinformatics L. Arend University of HamburgJ. Pauling Technical University of MunichJ. Baumbach University of HamburgT. Laske Presenter University of Hamburg
P67	Superior Protein Thermophilicity Prediction With Protein Language Model Embeddings Poster Bioinformatics F. Haselbeck TUM Campus Straubing for Biotechnology and Sustainability, Weihenstephan-Triesdorf University of Applied ScienceM. John Presenter TUM Campus Straubing for Biotechnology and Sustainability, Weihenstephan-Triesdorf University of Applied ScienceD. Grimm TUM Campus Straubing for Biotechnology and Sustainability, Weihenstephan-Triesdorf University of Applied Science
P68	BCU repository: the cloud based web frontend to access and explore omics datasets Poster Bioinformatics N. Knoppik Presenter Max Planck Institute for Heart and Lung ResearchP. Goymann Max Planck Institute for Heart and Lung ResearchJ. Walter Max Planck Institute for Heart and Lung ResearchD. Spothelfer Max Planck Institute for Heart and Lung ResearchC. Künne Max Planck Institute for Heart and Lung ResearchM. Looso Max Planck Institute for Heart and Lung Research
P69	NucleoDetective: Predicting nucleosome positions using single-cell ATAC-seq data Poster Bioinformatics M. Hobein Presenter Max Planck Institute for Heart and Lung ResearchM. Bentsen Max Planck Institute for Heart and Lung ResearchC. Kuenne Max Planck Institute for Heart and Lung ResearchM. Looso Max Planck Institute for Heart and Lung Research
P70	Magnipore: Detecting Single Nucleotide Changes in ONT Data of SARS-CoV-2 Poster Bioinformatics J. Spangenberg Presenter Friedrich Schiller Universität Jena
P71	Building a robust workflow for reproducible metabolic network curation Poster Bioinformatics S. Camborda La Cruz Presenter University of CologneN. Töpfer University of Cologne, CEPLAS
P72	Analysis of large-scale gene expression datasets in Synechocystis sp. PCC 6803 using gene regulatory networks Poster Bioinformatics F. Matten Presenter Bielefeld UniversityB. Frommer Bielefeld UniversityA. Bräutigam Bielefeld University
P73	A computational approach to identify genetic directional dependencies Poster Bioinformatics V. Heger Presenter Max Planck Institute for Heart and Lung ResearchR. Çetin Goethe University Frankfurt am MainM. Kaulich Goethe University Frankfurt am MainM. Looso Max Planck Institute for Heart and Lung Research
P74	Human leukocyte antigen (HLA) typing of a broad panel of cancer patient-derived xenograft (PDX) models enables personalized, preclinical immune-oncology studies Poster Bioinformatics T. Conrad Presenter EPO Berlin-Buch GmbHM. Stecklum EPO Berlin-Buch GmbHA. Wulf-Goldenberg EPO Berlin-Buch GmbHM. Becker EPO Berlin-Buch GmbHM. Dahlmann EPO Berlin-Buch GmbHS. Rhein EPO Berlin-Buch GmbHK. Klinghammer Charité University MedicineJ. Hoffmann EPO Berlin-Buch GmbH
P75	Single cell ATAC-seq Pipeline Poster Bioinformatics J. Detleffsen Presenter Max Planck Institute for Heart and Lung ResearchM. Bentsen Max Planck Institute for Heart and Lung ResearchM. Looso Max Planck Institute for Heart and Lung Research
P76	sORFDB - A database for sORFs, small proteins, and small protein groups in bacteria Poster Bioinformatics J. Hahnfeld Presenter Justus Liebig UniversityA. Goesmann Justus Liebig UniversityO. Schwengers Justus Liebig University
P77	Predictions of DNA mechanical properties at a genomic scale reveal potentially new functional roles of DNA flexibility. Poster Bioinformatics G. Back Presenter Max Planck Institute of Molecular Plant PhysiologyD. Walther Max Planck Institute of Molecular Plant Physiology
P78	Comparative analysis of Illumina and Nanopore amplicon sequences of eukaryotic communities from sediment samples Poster Bioinformatics D. Bludau Presenter Universität Duisburg Essen
P79	Timeshifting computation to reduce the carbon emissions of software Poster Bioinformatics A. Hartebrodt Presenter Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)J. Matschinske Bitspark GmbH, NuermbergD. Blumenthal Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)
P80	Decoding the Hidden Secrets of SNP Data: Revealing Ancestral Origins, Genomic Predictions, and Polygenic Risk Score Poster Bioinformatics J. Schwarzerová Presenter Brno University of TechnologyM. Hurta Brno University of TechnologyW. Weckwerth University of ViennaD. Walther Max-Planck-Institute of Molecular Plant Physiology
P81	Analysis of the mutual impact and importance of SNPs with random forest approaches Poster Bioinformatics L. Voges Presenter Universität Hamburg (UHH)S. Seifert Universität Hamburg (UHH)
P82	Uncovering uncharacterized binding of transcription factors from ATAC-seq footprinting data Poster Bioinformatics H. Schultheis Presenter Max Planck Institute for Heart and Lung ResearchM. Bentsen Max Planck Institute for Heart and Lung ResearchV. Heger Max Planck Institute for Heart and Lung ResearchM. Looso Max Planck Institute for Heart and Lung Research
P83	A Metatranscriptomic Approach to Study the Effect of Multiple Stressors on the Microbial Community Involved in CPOM Degradation in Freshwater Habitats Poster Bioinformatics A. Deep Presenter University of Duisburg-Essen
P84	multicrsipr²: A Versatile R Package for High-Throughput CRISPR-Cas gRNA Design with focus on gRNA pairs Poster Bioinformatics R. Wiegandt Presenter Max Planck Institute for Heart and Lung ResearchM. Looso Max Planck Institute for Heart and Lung Research
P85	Incorporating RNA 3D motifs into RNA secondary structure prediction Poster Bioinformatics M. Sebeke Presenter University of StuttgartB. Voß University of Stuttgart
P86	Effects of balanced and concordant complexes on the evolution of yeast metabolic networks Poster Bioinformatics A. Küken Presenter Universität PotsdamD. Langary Universität PotsdamZ. Nikolsoki Universität Potsdam
P87	Proteomic Meta-Study Harmonization, Mechanotyping and Drug Repurposing Candidate Prediction with ProHarMeD Poster Bioinformatics K. Adamowicz Presenter University of HamburgL. Arend University of HamburgA. Maier University of HamburgJ. Schmidt Fraunhofer Institute for Cell Therapy and Immunology IZIB. Küster Technical University of MunichO. Tsoy University of HamburgO. Zolotareva University of HamburgJ. Baumbach University of HamburgT. Laske University of Hamburg
P88	Multi-omics translational research – from human stem cell model to data to mechanistic insights Poster Bioinformatics A. Hoffrichter Presenter Department of Translational Brain Research, Central Institute of Mental Health (ZI), University of Heidelberg/Medical Faculty MannheimA. Rossetti Department of Translational Brain Research, Central Institute of Mental Health (ZI), University of Heidelberg/Medical Faculty MannheimR. Wilkens Department of Translational Brain Research, Central Institute of Mental Health (ZI), University of Heidelberg/Medical Faculty MannheimA. Jabali Department of Translational Brain Research, Central Institute of Mental Health (ZI), University of Heidelberg/Medical Faculty MannheimJ. Ladewig Department of Translational Brain Research, Central Institute of Mental Health (ZI), University of Heidelberg/Medical Faculty MannheimP. Koch Department of Translational Brain Research, Central Institute of Mental Health (ZI), University of Heidelberg/Medical Faculty Mannheim
P89	HOGVAX: Exploiting Epitope Overlaps to Maximize Population Coverage in Vaccine Design Poster Bioinformatics S. Schulte Presenter Heinrich Heine University DüsseldorfA. Dilthey University Clinic DüsseldorfG. Klau Heinrich Heine University Düsseldorf
P90	Research data management on genetic resources of Marchantia polymorpha ecotype ‘BoGa’ using the Annotated Research Context Poster Bioinformatics B. Laker Presenter Bielefeld UniversityW. Halpape Bielefeld UniversityA. Busch University of OsnabrückS. Zachgo University of OsnabrückA. Bräutigam Bielefeld University
P91	Unraveling the RNA Interactome through Identifier-Based RNA Duplex Detection Poster Bioinformatics C. Adelmann Presenter University of StuttgartC. Schaal University of StuttgartC. Sylvester University of StuttgartB. Voß University of Stuttgart
P92	Comparative Analysis of Fine-Tuned Data Center Models and Federated Learning for Multi-Center Breast Cancer Subtype Prediction Poster Bioinformatics T. Nguyen Presenter University of Göttingen - Georg-August-Universität GöttingenA. Hauschild University Medical Center Göttingen (UMG)
P93	Modeling bacterial growth in the human colon using ordinary differential equations Poster Bioinformatics A. Otto Presenter Goethe University FrankfurtJ. Ackermann Goethe University FrankfurtI. Koch Goethe University Frankfurt
P94	Discovering chromatin states using a flexible distribution hidden Markov model with duration modeling Poster Bioinformatics J. Schmitz Presenter Saarland UniversityN. Aggarwal Saarland UniversityL. Laufer Saarland UniversityJ. Walter Saarland UniversityA. Salhab Saarland UniversityS. Rahmann Saarland University
P95	A Toolbox for Biological Sequence Data Conversion: The Coordinate Converter Service (CCS) Poster Bioinformatics K. Kornrumpf Presenter University Medical Center Göttingen (UMG)T. Tucholski University Medical Center Göttingen (UMG)K. Drofenik University Medical Center Göttingen (UMG)N. Kurz University Medical Center Göttingen (UMG)J. Dönitz University Medical Center Göttingen (UMG)T. Beißbarth University Medical Center Göttingen (UMG)
P96	Classification of 3D FDG-PET Scans for Alzheimer's Disease Detection Poster Bioinformatics L. Bente Presenter TU Braunschweig L. Himstedt TU Braunschweig T. Kacprowski TU Braunschweig
P97	responseR: Summary Measures Simplify the Analysis of Repeated Measures Data Poster Bioinformatics G. Grabert Presenter Technical University of BraunschweigT. Kacprowski TU BraunschweigJ. de Haan Technische Universität Braunschweig
P98	PyCoMo: a python package for community metabolic model creation and analysis Poster Bioinformatics M. Predl Presenter UniWienM. Mießkes UniWienJ. Zanghellini UniWienT. Rattei UniWien
P99	Small molecule machine learning: All models are wrong, some may not even be useful Poster Bioinformatics F. Kretschmer Presenter Friedrich Schiller University JenaJ. Seipp Heinrich Heine University DüsseldorfM. Ludwig Friedrich Schiller University JenaG. Klau Heinrich Heine University DüsseldorfS. Böcker Friedrich Schiller University Jena
P_100	Gene Regulatory interActive Network Difference Explorer (GRANDE) Poster Bioinformatics N. Meyerhöfer Presenter Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)D. Blumenthal Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)A. Hartebrodt Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)
P_101	CatInfer- A Deep Learning model for classification of enzymes and localization of catalytic sites using XAI Poster Bioinformatics J. Kiederle Presenter Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)S. Lindner Presenter Heidelberg UniversityD. Blumenthal Friedrich-Alexander-Universität Erlangen-Nürnberg
P_102	Phosphoproteomics workflow to decipher the mechanisms behind CXCR7-mediated platelet inhibition Poster Bioinformatics Ö. Osmanoglu Presenter Julius-Maximilians-Universität WürzburgJ. Balkenhol Julius-Maximilians-Universität WürzburgS. Loroch Ruhr University BochumJ. Katzer Leibniz-Institut für Analytische Wissenschaften - ISASK. Dipali Leibniz-Institut für Analytische Wissenschaften - ISASA. Sickmann Leibniz-Institut für Analytische Wissenschaften - ISAST. Dandekar Julius-Maximilians-Universität WürzburgM. Chatterjee University Hospital Tübingen
P_103	Feature Reduction Improves Drug Response Prediction Poster Bioinformatics F. Firoozbakht Presenter Universität HamburgB. YOUSEFI Institut PasteurO. Tsoy Universität HamburgJ. Baumbach Universität HamburgB. Schwikowski Institut Pasteur
P_104	Resolving chimeric tandem mass spectra to investigate molecular structures in dissolved organic matter Poster Bioinformatics W. Tang Presenter Friedrich Schiller University JenaA. Ivanova Max Planck Institute for BiogeochemistryK. Dührkop Friedrich Schiller University JenaS. Schröter Max Planck Institute for BiogeochemistryC. Simon Helmholtz-Centre for Environmental ResearchG. Gleixner Max Planck Institute for BiogeochemistryS. Böcker Friedrich Schiller University Jena
P_105	Interactive Visualization and Analysis of Lipidomics Data Poster Bioinformatics T. Olzhabaev Presenter Universität HamburgL. Müller Bioanalytical Chemistry, Research Center Borstel, Leibniz Lung CenterD. Krause Bioanalytical Chemistry, Research Center Borstel, Leibniz Lung CenterD. Schwudke Bioanalytical Chemistry, Research Center Borstel, Leibniz Lung CenterA. Torda Universität Hamburg
P_106	Exploring Interaction Patterns of DNA and RNA using PLIP Poster Bioinformatics K. Linnemann Presenter Technische Universität DresdenM. Adasme Technische Universität DresdenS. Bolz Technische Universität DresdenF. Kaiser PharmAI GmbHS. Salentin Technische Universität DresdenV. Haupt PharmAI GmbHM. Schroeder Technische Universität Dresden
P_107	Intronic Polyadenylation Isoforms: A Novel Path For Therapy Poster Bioinformatics R. Barbieri Presenter Uniklinikum WürzburgG. Blahetek Uniklinikum WürzburgS. Vorlova Uniklinikum WürzburgF. Erhard University of WürzburgA. Zernecke Uniklinikum Würzburg
P_108	AGING: An Advanced Bioinformatic Approach for Comprehensive Longevity Research Poster Bioinformatics S. Crouch Presenter Julius-Maximilians-UniversityA. Caliskan Julius-Maximilians-UniversityE. Bencurova Julius-Maximilians-UniversityM. Scherrer Julius-Maximilians-UniversityT. Breitenbach Julius-Maximilians-UniversityT. Dandekar Julius-Maximilians-University
P_109	Modelling carbon dioxide harvesting in plants Poster Bioinformatics S. Saha Presenter University of WürzburgO. Osmanoglu University of WürzburgE. Özer University of WürzburgJ. Müller Julius-Maximilians-University Würzburg, Rauhenebrach, GermanyE. Bencurova University of WürzburgT. Dandekar University of Würzburg
P_110	Annotating small molecules from massive affinity selection libraries Poster Bioinformatics N. Haupt Presenter Friedrich Schiller Universität JenaE. van der Nol Leiden UniversityM. Hoffmann Bright Giant GmbHM. Ludwig Friedrich Schiller Universität JenaM. Engler Bright Giant GmbHK. Dührkop Friedrich Schiller Universität JenaS. Pomplun Leiden UniversityS. Böcker Friedrich Schiller Universität Jena
P_111	Transcriptional Regulator Identification Using Prize-Collecting Steiner Trees Poster Bioinformatics G. Galindez Presenter Technical University of BraunschweigB. Lopez University of the Philippines ManilaD. Blumenthal Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU)T. Kacprowski Technische Universität Braunschweig and Hannover Medical School
P_112	Online bias-aware disease module mining with ROBUST-Web Poster Bioinformatics S. Sarkar Presenter Friedrich-Alexander University (FAU) Erlangen-Nürnberg and Universitätsklinikum ErlangenM. Lucchetta IEO European Institute of Oncology IRCCSA. Maier University of HamburgM. Abdrabbou Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU) and Universitätsklinikum ErlangenJ. Baumbach University of HamburgM. List Technical University of MunichM. Schaefer IEO European Institute of Oncology IRCCSD. Blumenthal Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU) and Universitätsklinikum Erlangen
P_113	PetriAgents – Combining Petri Net-based Simulations of Metabolisms with Agent-Based Modeling Poster Bioinformatics M. Kirchner Presenter Goethe University FrankfurtJ. Ackermann Goethe University FrankfurtI. Koch Goethe University FrankfurtI. Đikić Goethe University Frankfurt
P_114	Explainable Graph Convolutional Networks vs. Gradient Boosting for Identifying Therapy Stage Based on Metabolomic Profiles in HCV Patients Poster Bioinformatics D. Dehncke Presenter Technische Universität Braunschweig and Hannover Medical SchoolG. Grabert Technische Universität Braunschweig and Hannover Medical SchoolL. Kalix Technische Universität Braunschweig and Hannover Medical SchoolJ. Tauwald Hannover Medical School (MHH)A. Kraft Hannover Medical School (MHH)M. Cornberg Hannover Medical School (MHH)T. More TU Braunschweig K. Hiller TU Braunschweig A. Dietrich Technical University of MunichM. List Technical University of MunichT. Kacprowski Technische Universität Braunschweig and Hannover Medical School
P_115	Assessing CNV Detection Algorithms for Ultra-Low-Coverage Whole-Genome Sequencing Data across Lung Cancer Types Poster Bioinformatics L. Kalson Presenter Diagnostic and Research Institute for Pathology, Medical University of GrazM. Fediuk Division of Thoracic Surgery and Hyperbaric Surgery, Department of Surgery, Medical University of GrazJ. Lindenmann Division of Thoracic Surgery and Hyperbaric Surgery, Department of Surgery, Medical University of GrazK. Kashofer Diagnostic and Research Institute for Pathology, Medical University of GrazP. Jost Clinical Division of Oncology, Department of Internal Medicine, Medical University of GrazL. Brcic Diagnostic and Research Institute for Pathology, Medical University of GrazS. Vosberg Clinical Division of Oncology, Department of Internal Medicine, Medical University of Graz
P_116	Exploring Evolution in a Changing Climate: Gamified Scientific Communication through Simulation Poster Bioinformatics L. Kalix Presenter TU BraunschweigL. Bente TU BraunschweigT. Kacprowski TU Braunschweig
P_117	Detection of alternative splicing: deep sequencing or deep learning Poster Bioinformatics L. Hackl Presenter Universität HamburgO. Tsoy Universität HamburgJ. Baumbach Universität Hamburg
P_118	DRaCOoN: Advanced Differential Regulation Analysis for Large-scale Biological Networks Poster Bioinformatics F. Delgado-Chaves Presenter Institute for Computational Systems BiologyF. Spurny Institute for Computational Systems BiologyO. Zolotareva Institute for Computational Systems BiologyJ. Baumbach Institute for Computational Systems Biology
P_119	Multi-omics analysis of the effect of drought and heat stress on seed germination in Hordeum vulgare Poster Bioinformatics A. Sahu Presenter Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK)
P_120	VirJenDB: the virus genome database from Jena Poster Bioinformatics N. Cassman Friedrich Schiller Universität , Jena/DES. Saghaei Presenter Friedrich Schiller Universität , Jena/DEH. Ziraksaz Friedrich Schiller Universität , Jena/DEM. Marz Friedrich Schiller Universität , Jena/DE
P_121	Analysis of single cell data with the nf-core workflow scrnaseq Poster Bioinformatics F. Heyl Presenter German Cancer Research Institute (DKFZ)
P_122	Investigating the role of Arabidopsis HISTONE DEACETYLASE 14 in chloroplasts Poster Bioinformatics F. Kotnik Presenter University MünsterC. Markiton University MünsterJ. Eirich University MünsterI. Finkemeier University Münster
P_123	SWGTS - A Platform for Stream-Based Host DNA Depletion Poster Bioinformatics P. Spohr Presenter Heinrich Heine University DüsseldorfM. Ried Heinrich Heine University DüsseldorfL. Kühle Heinrich Heine University DüsseldorfA. Dilthey University Hospital Düsseldorf
P_124	Decoding micro and alternative peptides through CRISPR-mediated functional profiling. Poster Bioinformatics S. Talyan Presenter Max Planck Institute for Heart and Lung Research
P_125	Characterization of amplification bias in prokaryotic single-cell transcriptomics Poster Bioinformatics J. Münch Presenter German Cancer Research Center (DKFZ)M. Sobol Karlsruhe Institute of TechnologyA. Kaster Karlsruhe Institute of TechnologyB. Brors German Cancer Research Center (DKFZ)
P_126	A knowledge-graph based approach to connect nutrition and disease on a molecular level Poster Bioinformatics V. Würf Presenter Technical University of MunichL. Falk Technical University of MunichN. Köhler Technical University of MunichJ. Pauling Technical University of Munich
P_127	Mining Ribo-Seq Data from the Sequence Read Archive Poster Bioinformatics K. Maidhof Presenter Julius-Maximilians-Universität WürzburgF. Erhard Universität Regensburg
P_128	OM2DNA: Fast and Robust Processing of Optical Mapping Data by Encoding Label Information Into Artificial DNA Sequences Poster Bioinformatics L. Kühle Presenter Heinrich Heine University DüsseldorfJ. Köster University of Duisburg-EssenG. Klau Heinrich Heine University Düsseldorf
P_129	Investigation of transposon mediated gene silencing in the evolutionary context of algal vitamin B12 dependency Poster Bioinformatics A. Holzer Presenter Saarland UniversityP. Mehrshahi University of CambridgeS. Strobbe Ghent UniversityJ. Verstraete Ghent UniversityD. Salmon University of ExeterF. Bunbury University of CambridgeL. Heughebaert Ghent UniversityS. Newsad University of CambridgeA. Sayer University of CambridgeL. Archer University of CambridgeN. Smirnoff University of ExeterC. Stove Ghent UniversityD. Van Der Straeten Ghent UniversityA. Smith University of Cambridge
P_130	Modelling Non-local information processing of the cortex Poster Bioinformatics J. Balkenhol Presenter Uni Würzburg
P_131	Towards the integration of phenotypic and molecular signatures into a prodromal marker for Parkinson’s disease Poster Bioinformatics T. Hentrich Presenter Saarland UniversityE. Schenk University of TübingenM. Kobor University of British ColumbiaO. Rieß University of TübingenJ. Schulze-Hentrich Saarland University
P_132	The Proteomes That Feed The World Poster Bioinformatics C. Saylan Presenter Technical University of MunichS. Hein Technical University of MunichG. Tsiklauri Technical University of MunichQ. Abbas Technical University of MunichJ. Pan Technical University of MunichA. Soleymaniniya Technical University of MunichM. Picciani Technical University of MunichG. Haljiti Technical University of MunichE. Aydin Technical University of MunichV. Ramirez Technical University of MunichG. Giordano Technical University of MunichP. Andrade Galan Technical University of MunichL. Würstl Technical University of MunichS. Urzinger Technical University of MunichA. Piller Technical University of MunichP. Röhrl Technical University of MunichS. Brajkovic Technical University of MunichC. Dawid Technical University of MunichS. Wilhelm Technical University of MunichC. Schwechheimer Technical University of MunichC. Schön Technical University of MunichV. Avramova Technical University of MunichJ. Pauling Technical University of MunichC. Ludwig Technical University of MunichD. Frischmann Technical University of MunichM. Wilhelm Technical University of MunichC. Gutjahr Technical University of MunichR. Hückelhoven Technical University of MunichB. Poppenberger Technical University of MunichB. Kuster Technical University of Munich
P_133	Studying protein 3D structures using network science Poster Bioinformatics K. Newaz Presenter University of Hamburg
P_134	Graph Based Strategies to Finding CRISPR Arrays in Metagenomic Data Poster Bioinformatics F. Talibli Presenter University of StuttgartB. Voß University of Stuttgart
P_135	ScyNet: Visualizing interactions in communities with metabolic models Poster Bioinformatics M. Predl Presenter UniWienK. Gandolf UniWienM. Hofer UniWienT. Rattei UniWien
P_136	Facilitating Diagnostic Marker Development from Whole Genomes through the Identification of Taxonomic Neighborhoods Poster Bioinformatics I. Tsers Presenter Max Planck Institute for Evolutionary BiologyB. Haubold Max Planck Institute for Evolutionary BiologyS. Denker Max Planck Institute for Evolutionary Biology
P_137	Comprehensive and Rapid Profiling of TCR Repertoires: Unraveling the Immune Response and Tracking Dynamic Changes Poster Bioinformatics N. Seifert Presenter University Medical Center GöttingenS. Reinke University Hospital Schleswig-HolsteinW. Klapper University Hospital Schleswig-HolsteinM. Altenbuchinger University Medical Center Göttingen
P_138	Single-Cell Omics Strategies Shedding Light on Intronic Variants and Mis-Splicing in Primary PDAC Poster Bioinformatics E. Duman Presenter NIG-UMG NGS Interactive Genomics University Medical Center Göttingen (UMG)M. Sitte Presenter University Medical Center Göttingen (UMG)E. Hessmann University Medical Center GöttingenA. Papantonis University Medical Center GöttingenG. Salinas University Medical Center Göttingen
P_139	Privacy-Preserving Federated Differential Protein Expression Analysis with FedProt Poster Bioinformatics Y. Burankova Presenter Technical University of Munich, Munich, University of HamburgO. Zolotareva University of HamburgM. Abele Technical University of MunichF. Gruhn Helmholtz Center MunichC. von Törne Helmholtz Center MunichT. Barth Ludwig Maximilian University of MunichL. Schweizer Max Planck Institute of BiochemistryP. Giesbertz German Center for Neurodegenerative DiseasesM. Bakhtiari University of HamburgA. Hartebrodt University of Southern DenmarkT. Frisch University of Southern DenmarkC. Meng Technical University of MunichJ. Matschinske University of HamburgJ. Späth University of HamburgR. Röttger University of Southern DenmarkV. Schwämmle University of Southern DenmarkS. Hauck Helmholtz Center MunichS. Lichtenthaler German Center for Neurodegenerative DiseasesA. Imhof Ludwig Maximilian University of MunichM. Mann Max Planck Institute of BiochemistryC. Ludwig Technical University of MunichB. Küster Technical University of MunichJ. Baumbach University of Southern Denmark, Odense, Denmark, University of Hamburg
P_140	Privacy-Aware Microbiome Profiling for Colorectal Cancer Detection using Federated Learning Poster Bioinformatics N. Probul Presenter University of HamburgM. Almeida Université Paris-SaclayP. Barbet Université Paris-SaclayE. Le Chatelier Université Paris-SaclayM. Berland Université Paris-SaclayC. Saak Universität HamburgS. Dusko Ehrlich University College LondonN. Pons Université Paris-SaclayJ. Baumbach Universität Hamburg