Poster Programme – German Conference on Bioinformatics (GCB) 2020

List of posters

A detailed overview of all events can be found in the congress planner.

Filter

Code	Title
P 01	AccuFusion: A new statistical algorithm for detecting gene fusions in RNA-Seq data Poster Bioinformatics X. Su Presenter UT MD ANDERSON CANCER CENTERY. Yuan UT MD ANDERSON CANCER CENTER
P 02	SynWiki – A relational database for the current annotation of the synthetic organism JCVI-syn3.0 Poster Bioinformatics T. Pedreira Presenter Georg-August-Universität, GöttingenH. Gebauer Georg-August-Universität, GöttingenJ. Stülke Georg-August-Universität, Göttingen
P 04	Identification of Novel Antimicrobial Resistance Targets using Deep Convolutional Neural Networks Poster Bioinformatics Y. Ren Presenter Philipps University MarburgA. Hauschild Philipps University MarburgD. Heider Philipps University Marburg
P 05	POLAR: Prediction Of proLonged mechanical ventilation in patients with myAsthenic cRisis Poster Bioinformatics M. Diehl Presenter Philips University of MarburgB. Neumann District Hospital RegensburgA. Hauschild Philipps University MarburgH. Stetefeld University Hospital CologneD. Heider University of Marburg
P 06	Epigenetic features improve TALE target prediction Poster Bioinformatics A. Erkes Presenter Martin Luther University Halle-WittenbergS. Mücke Leibniz Universität HannoverM. Reschke Leibniz Universität HannoverJ. Boch Leibniz Universität HannoverJ. Grau Martin Luther University Halle-Wittenberg
P 07	QSAR MODELS BASED ON FINGERPRINT FOR PREDICTION OF AFFINITY OF BCL-2 INHIBITORS Poster Bioinformatics s. Byadi Presenter University hassan II CasablancaH. MOUHI EDDINE university Chouaib DoukkaliK. SADIK university Chouaib DoukkaliČ. PODLIPNIK Faculty of Chemistry and Chemical Technology, University of LjubljanaA. ABOULMOUHAJIR University hassan II Casablanca
P 08	The Antibiotic Resistant Target Seeker (ARTS) Version 2.0 – Improved Exploration of Antibiotic Gene Clusters in Bacterial Genomes Poster Bioinformatics M. Mungan Presenter Interfaculty Institute of Microbiology and Infection MedicineM. Alanjary Wageningen UniversityK. Blin Technical University of DenmarkT. Weber Technical University of DenmarkM. Medema Wageningen UniversityN. Ziemert Interfaculty Institute of Microbiology and Infection Medicine
P 09	Comparative transcriptomics and epigenomics to analyze the role of chromatin modifiers in multicellular development of fungi Poster Bioinformatics R. Lütkenhaus Ruhr-University BochumJ. Breuer Ruhr-University BochumM. Nowrousian Presenter Ruhr-University Bochum
P 10	New Biomarkers for Immune Checkpoint Inhibition Therapy in DNA and RNA Data Poster Bioinformatics B. Rotter Presenter GenXPro GmbHL. Feist GenXPro GmbH
P 11	Analyzing coverage in smMIPs data Poster Bioinformatics S. Sandmann Presenter Westfälische Wilhelms-Universität Münster, Institut für Medizinische InformatikA. de Graaf Radboud University Medical CenterJ. Jansen Radboud University Medical CenterM. Dugas Westfälische Wilhelms-Universität Münster, Institut für Medizinische Informatik
P 12	InstantDL - An easy-to-use deep learning pipeline for image segmentation and classification Poster Bioinformatics D. Waibel Presenter Helmholtz Center MunichS. Shetab Boushehri Helmholtz Center MunichC. Marr Helmholtz Center Munich
P 13	Computational protein engineering approaches to alter the substrate specificity and increase the activity of metabolic enzymes Poster Bioinformatics M. Scherer Presenter Julius Maximilians University of WürzburgE. Bencurova Julius Maximilians University of WürzburgI. Yunus Imperial College LondonD. Zabala Imperial College LondonT. Dandekar Julius Maximilians University of WürzburgP. Jones Imperial College London
P 14	An ensemble biclustering approach for identification of molecular signatures in omics data. Poster Bioinformatics T. Rose Presenter Technical University of MunichR. Röttger University of Southern DenmarkJ. Pauling Technical University of Munich
P 15	Proposal for cloud-based biobanking while maintaining strong data protection Poster Bioinformatics B. Josephs Presenter Institute for Prevention and Occupational Medicine of the German Social Accident InsuranceA. Müller Institute for Prevention and Occupational Medicine of the German Social Accident InsuranceJ. Hovanec Institute for Prevention and Occupational Medicine of the German Social Accident InsuranceO. Pfeifer-Bley Institute for Prevention and Occupational Medicine of the German Social Accident InsuranceD. Taeger Institute for Prevention and Occupational Medicine of the German Social Accident InsuranceT. Brüning Institute for Prevention and Occupational Medicine of the German Social Accident InsuranceT. Behrens Institute for Prevention and Occupational Medicine of the German Social Accident Insurance
P 16	InterCellar: an R/Shiny app enabling interactive analysis of cell-cell interactions from single-cell RNA sequencing data Poster Bioinformatics M. Interlandi Presenter University of MünsterM. Dugas University of Münster
P 17	Application of bioinformatics methods opens up new perspectives in the study of micro-RNAs Poster Bioinformatics E. Namiot Presenter FMSMU
P 18	Copy Number Detection in DNA methylation Poster Bioinformatics A. Ramakrishnan Presenter Helmholtz Zentrum München - German Research Center for Environmental Health (GmbH)
P 19	Cell Fate Clusters in ICM Organoids Arise from Cell Fate Heredity & Division – a Modelling Approach Poster Bioinformatics T. Liebisch Presenter Frankfurt Institute of Advanced Studies (FIAS) and Goethe UniversityA. Drusko Frankfurt Institute of Advanced Studies (FIAS) and Goethe UniversityB. Mathew Buchmann Institute for Molecular Life Sciences, Goethe UniversityE. Stelzer Buchmann Institute for Molecular Life Sciences, Goethe UniversityS. Fischer Julius-Maximilian University of WürzburgF. Matthäus Frankfurt Institute of Advanced Studies (FIAS) and Goethe University
P 20	Graph-theoretical analysis of the topology of large protein complexes based on cryo-EM data Poster Bioinformatics J. Wolf Presenter Goethe-UniversityJ. Ackermann Goethe-UniversityI. Koch Goethe-University
P 21	Bioinformatic analysis of morphological differences in tissue images of Hodgkin lymphoma patients regarding new and recurrent cases Poster Bioinformatics T. Bergmann Presenter Goethe University FrankfurtP. Wurzel Frankfurt Institute for Advanced StudiesJ. Ackermann Goethe University FrankfurtM. Hansmann Frankfurt Institute for Advanced StudiesI. Koch Goethe University Frankfurt
P 22	Structural characterization of cell graphs of CD30-positive cells in histological images of Hodgkin lymphoma using bioinformatic methods Poster Bioinformatics D. Hein Presenter Goethe Universität Frankfurt a.M.P. Wurzel Frankfurt Institute of Advanced Studies (FIAS)J. Ackermann Goethe Universität Frankfurt a.M.I. Koch Goethe Universität Frankfurt a.M.M. Hansmann Frankfurt Institute of Advanced Studies (FIAS)
P 23	Dynamic properties of cyclosporines revealed by NMR and MD simulations and their influence on mitochondrial pore Poster Bioinformatics P. Kobchikova Presenter Kazan Federal UniversityS. Efimov Kazan Federal UniversityV. Klochkov Kazan Federal UniversityM. Dubinin Mari State University
P 24	Bioinformatic tools used in the genome analysis of bovine mastitis etiologic agents: a scientometric profile Poster Bioinformatics B. Metzner Presenter Universidade Tecnológica Federal do ParanáA. Trentin Universidade Tecnológica Federal do ParanáG. Sanches Universidade Tecnológica Federal do ParanáN. Gabiatti Universidade Tecnológica Federal do ParanáS. Souza Universidade Tecnológica Federal do ParanáF. Barros Universidade Tecnológica Federal do ParanáD. Leite Universidade Tecnológica Federal do Paraná
P 25	How to draw the line – Raman spectroscopy as a tool for the assessment of biomedicines Poster Bioinformatics B. Becker Paul-Ehrlich-InstitutW. Matheis Paul-Ehrlich-InstitutV. Öppling Paul-Ehrlich-InstitutI. Bekeredjian-Ding Paul-Ehrlich-InstitutC. Kamp Presenter Paul-Ehrlich-Institut
P 26	A deep learning approach to predict myocardial scar tissue based on electrocardiogram data Poster Bioinformatics J. Hannig Presenter Technische Hochschule Mittelhessen (THM) - University of Applied SciencesN. Gumpfer Presenter Technische Hochschule Mittelhessen (THM) - University of Applied SciencesJ. Prim Technische Hochschule Mittelhessen (THM) - University of Applied SciencesD. Grün Justus Liebig University GießenT. Keller Justus Liebig University GießenM. Guckert Technische Hochschule Mittelhessen (THM) - University of Applied Sciences
P 29	Germline variant analysis of family trios in children with cancer Poster Bioinformatics C. Walter Presenter Westfälische Wilhelms-Universität Münster, Institut für Medizinische InformatikR. Wagener Heinrich Heine Universität DüsseldorfL. Yasin Heinrich Heine Universität DüsseldorfD. Alzoubi Heinrich Heine Universität DüsseldorfT. Brozou Heinrich Heine Universität DüsseldorfU. Fischer Heinrich Heine Universität DüsseldorfA. Borkhardt Heinrich Heine Universität DüsseldorfM. Dugas Westfälische Wilhelms-Universität Münster, Institut für Medizinische Informatik
P 30	Force Inference – Estimating the dynamics of mechanical forces in collectively migrating epithelial tissues from time-lapse images Poster Bioinformatics Z. Lange Presenter Goethe Universität Frankfurt am MainF. Matthäus Goethe Universität Frankfurt am Main
P 31	Detection of Molecular Mimicry between Microbial and Human Epitopes Associated with Autoimmune Diseases Poster Bioinformatics R. Gilyazev Presenter TH BingenA. Krause TH Bingen
P 32	miRNeo: a graph-based infrastructure for rapid large-scale computation of epitranscriptional interactions Poster Bioinformatics S. Lobentanzer Presenter Goethe-Universität Frankfurt am Main
P 33	3D image analysis reveals lymphoma-specific structures of tumor-associated macrophages Poster Bioinformatics A. Vladisavljevic Johann Wolfgang Goethe-University Frankfurt am MainP. Wurzel Presenter Frankfurt Institute of Advanced Studies (FIAS) and Goethe UniversityS. Scharf Johann Wolfgang Goethe-University Frankfurt am MainH. Schäfer Hospital of the Goethe University FrankfurtJ. Ackermann Johann Wolfgang Goethe-University Frankfurt am MainI. Koch Johann Wolfgang Goethe-University Frankfurt am MainM. Hansmann Johann Wolfgang Goethe-University Frankfurt am Main
P 34	Representation of RNA-Protein Complexes in Topology Graphs. Poster Bioinformatics M. Zunker Presenter Goethe Universität Frankfurt am MainJ. Wolf Goethe Universität FrankfurtI. Koch Goethe Universität Frankfurt
P 35	Distinct genomics organization in different classes of U1 snDNA in Astyanax mexicanus and Psalidodon paranae. Poster Bioinformatics R. Calegari Presenter São Paulo State University - UNESPF. Porto-Foresti São Paulo State University - UNESPR. Utsunomia Rural Federal University of Rio de Janeiro
P 36	Phylogeny and Possible Functions of Bacterial and Protozoal Lipoxygenases Poster Bioinformatics G. Kurakin Presenter Tver State Medical UniversityA. Samoukina Tver State Medical UniversityN. Potapova Institute for Information Transmission Problems of the Russian Academy of Sciences (Kharkevich Institute)
P 37	Kinetic Model of AMPK-Mediated Autophagy Initiation Poster Bioinformatics M. Moesser Presenter Johann Wolfgang Goethe-UniversityJ. Ackermann Johann Wolfgang Goethe-UniversityA. Hamann Johann Wolfgang Goethe-UniversityH. Osiewacz Johann Wolfgang Goethe-UniversityI. Koch Johann Wolfgang Goethe-University
P 38	Identification of alternative splicing regulators in RNA-Seq using machine learning Poster Bioinformatics S. Lipnitskaya Presenter Institute of Molecular Biology gGmbHM. Enculescu Institute of Molecular Biology gGmbHM. Cortés López Institute of Molecular Biology gGmbHS. Braun Institute of Molecular Biology gGmbHJ. König Institute of Molecular Biology gGmbHS. Legewie Institute of Molecular Biology gGmbH
P 39	Interactions between human gut microbiome, medication and clinical parameters Poster Bioinformatics I. Kel Presenter European Molecular Biology Laboratory (EMBL)M. Kuhn European Molecular Biology Laboratory (EMBL)P. Bork European Molecular Biology Laboratory (EMBL)
P 40	Analysis of innate immunity and polyunsaturated fatty acid cascades in Parkinson's disease based on RNA sequencing data Poster Bioinformatics E. Ptitsyna Presenter Lomonosov Moscow State UniversityN. Azbukina Lomonosov Moscow State UniversityD. Chistyakov Lomonosov Moscow State UniversityM. Sergeeva Lomonosov Moscow State University
P 41	Prediction of clinically significant prostate cancer based on magnetic resonance images and tissue microarrays applying machine learning approaches Poster Bioinformatics Y. Zhdanovich Presenter Johann Wolfgang Goethe-University Frankfurt am MainJ. Ackermann Johann Wolfgang Goethe-University Frankfurt am MainI. Koch Johann Wolfgang Goethe-University Frankfurt am MainS. Bernatz University Hospital FrankfurtP. Mandel University Hospital FrankfurtF. Chun University Hospital FrankfurtJ. Köllermann University Hospital FrankfurtN. Rosbach University Hospital FrankfurtT. Vogl University Hospital FrankfurtP. Wild University Hospital Frankfurt
P 42	Text Mining-based Word Representations for Biomedical Data Analysis and Machine Learning Tasks Poster Bioinformatics H. Alachram Presenter University Medical Center GöttingenH. Chereda University Medical Center GöttingenP. Stegmaier geneXplain GmbHT. Beißbarth University Medical Center GöttingenE. Wingender geneXplain GmbH
P 43	Multiple-instance learning for label-free bladder cancer cytopathology Poster Bioinformatics J. Butke Presenter Ruhr University Bochum, Department of BiophysicsT. Frick Ruhr University Bochum, Department of BiophysicsS. El-Mashtoly Ruhr University Bochum, Department of BiophysicsK. Gerwert Ruhr University Bochum, Department of BiophysicsA. Mosig Ruhr University Bochum, Department of Biophysics
P 44	IndiForest: machine learning on indicators and ranks for cancer diagnosis Poster Bioinformatics M. Guryleva Presenter Moscow Lomonosov State University
P 45	In Silico Models to Understand Cancer Pathways and Molecular Treatment Responses Poster Bioinformatics Ö. Osmanoglu Presenter Julius-Maximilians-Universität WürzburgJ. Hund Julius-Maximilians-Universität WürzburgM. Fuchs Julius-Maximilians-Universität WürzburgG. Dandekar Julius-Maximilians-Universität WürzburgM. Kunz Friedrich-Alexander University of Erlangen-NürnbergT. Dandekar Julius-Maximilians-Universität Würzburg
P 46	Predicting Modifiability of Redox-Sensitive Cysteines with Supervised Machine Learning Hidden Markov Models Poster Bioinformatics N. Nover Presenter Goethe Universität Frankfurt am MainM. Keßler Goethe Universität Frankfurt am MainJ. Ackermann Goethe Universität Frankfurt am MainI. Koch Goethe Universität Frankfurt am Main
P 47	Modeling nucleosome binding using random forests based on periodic sequence structure patterns Poster Bioinformatics M. Sahrhage Presenter University Medical Center GöttingenM. Haubrock University Medical Center GöttingenN. Weinert University Medical Center GöttingenT. Beißbarth University Medical Center Göttingen
P 48	On Variant Discovery in the Genomes of Fungal Plant Pathogens Poster Bioinformatics L. Potgieter Presenter Max-Planck-Institute for Evolutionary BiologyA. Feurtey Max-Planck-Institute For Evolutionary BiologyJ. Dutheil Max-Planck-Institute for Evolutionary BiologyE. Stukenbrock Max-Planck-Institute for Evolutionary Biology
P 49	A Bioinformatics Analysis Pipeline for the Integrative Functional Understanding of Global Transcriptome Data and its Interplay with the Interactome Poster Bioinformatics M. Fuchs Presenter Friedrich Alexander Universität (FAU)C. Liang University of WürzburgS. Stojanovic Hannover Medical SchoolJ. Fiedler Hannover Medical SchoolL. Kapsner Friedrich Alexander Universität (FAU)C. Bogdan Friedrich-Alexander University (FAU) Erlangen-Nürnberg and Universitätsklinikum ErlangenJ. Distler Friedrich-Alexander University (FAU) Erlangen-Nürnberg and Universitätsklinikum ErlangenH. Prokosch Friedrich Alexander Universität (FAU)T. Thum Hannover Medical SchoolM. Kunz Friedrich Alexander Universität (FAU)
P 50	An Integrated Bioinformatics Pipeline for the Systematic Calculation of Diagnostic and Prognostic Marker Signatures Poster Bioinformatics N. Dickel Presenter Friedrich-Alexander University of Erlangen-NürnbergL. Kapsner Friedrich-Alexander University of Erlangen-NürnbergC. Motsebo Fenkam Friedrich-Alexander University of Erlangen-NürnbergO. Roche-Lancaster University of WürzburgT. Dandekar University of WürzburgH. Prokosch Friedrich-Alexander University of Erlangen-NürnbergM. Kunz Friedrich-Alexander University of Erlangen-Nürnberg
P 51	Steps towards a virtual lymph node Poster Bioinformatics S. Scharf Presenter Frankfurt Institute of Advanced Studies (FIAS) and Goethe UniversityP. Wurzel Frankfurt Institute of Advanced Studies (FIAS) and Goethe UniversityJ. Ackermann Goethe Universität Frankfurt am MainM. Hansmann Frankfurt Institute of Advanced Studies (FIAS)I. Koch Goethe Universität Frankfurt am Main
P 52	Using database queries to detect conspicuous R-R-intervals in electrocardiogram records Poster Bioinformatics N. Gumpfer Presenter Technische Hochschule Mittelhessen (THM) - University of Applied SciencesJ. Prim Technische Hochschule Mittelhessen (THM) - University of Applied SciencesJ. Hannig Technische Hochschule Mittelhessen (THM) - University of Applied SciencesD. Grün Justus-Liebig-University GießenA. Morgen Philipps Universität MarburgM. Körber Philipps Universität MarburgB. Seeger Philipps Universität MarburgT. Keller Justus-Liebig-University GießenM. Guckert Technische Hochschule Mittelhessen (THM) - University of Applied Sciences
P 53	FilterFFPE: An Artifact Chimeric Read Filter to Improve SV Detection in FFPE Samples Poster Bioinformatics L. Wei Presenter Institute of Medical Informatics, University of MünsterS. Sandmann Institute of Medical Informatics, University of MünsterM. Dugas Institute of Medical Informatics, University of Münster
P 54	EasyFuse: Highly specific detection of fusion transcripts from RNA-seq data Poster Bioinformatics J. Ibn-Salem Presenter TRON Translational Oncology Mainz
P 55	NeoFox: A toolbox to annotate neoantigen candidates with immunogenicity features Poster Bioinformatics F. Lang Presenter TRON Translational Oncology MainzP. Riesgo Ferreiro Presenter TRON Translational Oncology MainzM. Löwer TRON Translational Oncology MainzB. Schrörs TRON Translational Oncology MainzU. Sahin BioNTech SE
P 56	Fusion Protein Screening in Archaea Poster Bioinformatics G. Nair University of ViennaA. Padalko Presenter University of ViennaF. Sousa University of Vienna
P 57	DIGGER: a webtool to explore the functional impact of alternative splicing in protein interactions Poster Bioinformatics Z. Louadi Presenter Technical University of MunichK. Yuan Technical University of MunichO. Tsoy Technical University of MunichA. Gress Helmholtz Centre for Infection ResearchO. Kalinina Helmholtz Center for Infection ResearchJ. Baumbach Technical University of MunichT. Kacprowski Technical University of MunichM. List Technical University of Munich
P 58	Explaining decisions of Graph Convolutional Neural Networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer Poster Bioinformatics H. Chereda Presenter University Medical Center GöttingenA. Bleckmann University Medical Center MünsterK. Menck University Medical Center MünsterJ. Perera-Bel Hospital del Mar Medical Research Institute (IMIM) BarcelonaP. Stegmaier geneXplain GmbHF. Auer University of AugsburgF. Kramer University of AugsburgA. Leha University Medical Center GöttingenT. Beißbarth University Medical Center Göttingen
P 59	Graph-based visualization of structural topologies of MD simulation data Poster Bioinformatics I. Nurhassen Presenter Goethe Universität Frankfurt a.M.J. Wolf Goethe Universität Frankfurt a.M.J. Ackermann Goethe Universität Frankfurt a.M.O. Haapanen University of HelsinkiV. Sharma University of HelsinkiI. Koch Goethe Universität Frankfurt a.M.
P 60	Deconvolution of data from transcriptome analysis of pancreatic cancer samples makes it possible to assess the molecular biological picture of the tumor. Poster Bioinformatics A. Kakoichankava Presenter VSMU
P 61	Allelic, haplotypic frequencies, and LD comparisons between Arlequin v. 3.5 and PyPop v. 0.7 from population sample data Poster Bioinformatics L. Barreto Cabral Presenter Federal University of ParáP. de Souza Mendonça-Mattos Federal University of Pará
P 62	EpiRegio: Analysis and retrieval of regulatory elements linked to gene Poster Bioinformatics N. Baumgarten Goethe Universität FrankfurtD. Hecker Presenter Goethe Universität FrankfurtS. Karunanithi Goethe Universität FrankfurtF. Schmidt Genome Institute of Singapore (GIS), A*StarM. List Technical University of MunichM. Schulz Goethe Universität Frankfurt
P 63	Automated pipeline to perform GWAS and PRS analysis with cluster support Poster Bioinformatics R. Reščenko Presenter University of LatviaR. Pečulis University of LatviaJ. Kloviņš University of Latvia
P 64	The virtual infection model of an epithelial cell by Salmonella Typhimurium: an agent-based simulation Poster Bioinformatics J. Hannig Presenter Technische Hochschule Mittelhessen (THM) - University of Applied SciencesN. Alikhani Chamgordani Presenter Johann Wolfgang Goethe-University Frankfurt am MainM. Guckert Technische Hochschule Mittelhessen (THM) - University of Applied SciencesJ. Ackermann Johann Wolfgang Goethe-University Frankfurt am MainI. Koch Johann Wolfgang Goethe-University Frankfurt am Main