Poster Programme – German Conference on Bioinformatics (GCB) 2021

List of posters

A detailed overview of all events can be found in the congress planner.

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Code	Title
P 01	Pathway enrichment, machine learning and causal reasoning analysis to deconvolute potential targets of a small-molecule tau aggregation inhibitor Poster Bioinformatics L. Hosseini-Gerami Presenter University of CambridgeE. Ficulle University College LondonN. Humphryes-Kirilov C4X DiscoveryD. Airey Eli Lilly and CompanyJ. Scherschel Eli Lilly and CompanyB. Eastwood Eli Lilly and CompanyS. Bose Eli Lilly and CompanyD. Collier Eli Lilly and CompanyE. Laing GSKD. Evans Google DeepMindH. Broughton Eli Lilly and CompanyA. Bender University of Cambridge
P 02	Selection of important and related variables utilizing surrogate variables in random forests Poster Bioinformatics S. Seifert Presenter Hamburg School of Food Science, Universität Hamburg
P 03	Comparison of change point-detection algorithms for short time series of clustered gene expression data Poster Bioinformatics M. Sieg Presenter Charité - Universitätsmedizin BerlinJ. Kruppa Charité - Universitätsmedizin Berlin
P 04	A global survey of specialized metabolic diversity encoded in bacterial genomes Poster Bioinformatics A. Gavriilidou Presenter Eberhard Karls University of TübingenS. Kautsar Wageningen University & ResearchD. Krug Helmholtz Zentrum für InfektionsforschungR. Müller Helmholtz Zentrum für InfektionsforschungM. Medema Wageningen UniversityN. Ziemert Eberhard Karls Universität TübingenN. Zaburannyi Helmholtz Institute for Pharmaceutical Research Saarland (HIPS)
P 05	Automated prediction of modules and assembly of respiratory complex I using graphs of topology of protein structures Poster Bioinformatics J. Wolf Presenter Goethe-UniversityM. Zunker Goethe-UniversityJ. Ackermann Goethe-UniversityI. Koch Goethe-University
P 06	Comparative genomics of proteins involved in the electrical generation of prokaryotes and archaea Poster Bioinformatics A. Tsareva Presenter ITMO University
P 07	Investigation of transcription factor co-occurrence reveals protein complexes regulating gene expression Poster Bioinformatics M. Bentsen Presenter Max Planck Institute for Heart and Lung ResearchV. Heger Max Planck Institute for Heart and Lung ResearchM. Looso Max Planck Institute for Heart and Lung Research
P 08	De novo generation of binding motifs for unknown transcription factors from ATAC-seq data Poster Bioinformatics H. Schultheis Presenter Max-Planck-Institute for Heart and Lung ResearchM. Bentsen Max-Planck-Institute for Heart and Lung ResearchM. Looso Max-Planck-Institute for Heart and Lung Research
P 09	Network Analysis to Improve Tumor Mutational Signature Identification Poster Bioinformatics S. Sulaimany Presenter University of Kurdistan
P 10	Virtual lymph node: A Petri net model of the adaptive immune response Poster Bioinformatics S. Scharf Presenter Frankfurt Institute of Advanced Studies (FIAS) and Goethe UniversityP. Wurzel Frankfurt Institute of Advanced Studies (FIAS) and Goethe UniversityJ. Ackermann Molecular Bioinformatics, Goethe-UniversityM. Hansmann Frankfurt Institute of Advanced Studies (FIAS)I. Koch Molecular Bioinformatics, Goethe-University
P 11	Design of an optimal COVID-19 surveillance protocol for child care facilities using an infection spread model Poster Bioinformatics P. Rudolph Presenter Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute, Jena, GermanyS. Timme Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute, Jena, GermanyM. Figge Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute, Jena, Germany
P 13	Whole-genome comparison of Aspergillus fumigatus environmental and clinical isolates reveals triazole resistance-related genes Poster Bioinformatics T. Sae-Ong Presenter Hans Knöll Institute (HKI)A. E. Barber Hans Knöll Institute (HKI)K. Kang Hans Knöll Institute (HKI)J. Li City University of Hong KongG. Walther Hans Knöll Institute (HKI)G. Panagiotou Hans Knöll Institute (HKI)O. Kurzai Hans Knöll Institute (HKI)
P 14	From data deposition to visualising variants - how FAIR principles are facilitating flow between plant genomics resources Poster Bioinformatics G. Naamati European Bioinformatics Institute (EMBL-EBI)A. Thormann European Bioinformatics Institute (EMBL-EBI)S. Hunt European Bioinformatics Institute (EMBL-EBI)S. Dyer European Bioinformatics Institute (EMBL-EBI)B. Contreras Moreira Presenter European Bioinformatics Institute (EMBL-EBI)E. ELIXIR consortium FONDUE https://elixir-europe.org/about-us/commissioned-services/fondue
P 15	Pathogenic potential prediction of novel fungal DNA based on a newly curated fungi-host database Poster Bioinformatics F. Nasri Presenter Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, 14482 Potsdam and Department of Mathematics and Computer Science, Free University of Berlin, 14195 BerlinJ. Bartoszewicz Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, 14482 Potsdam and Department of Mathematics and Computer Science, Free University of Berlin, 14195 BerlinM. Nowicka Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, 14482 Potsdam and Department of Mathematics and Computer Science, Free University of Berlin, 14195 BerlinB. Renard Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam
P 16	DivBrowse - a web application for interactive visualization and analysis of SNP matrices Poster Bioinformatics P. König Presenter Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)S. Beier Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)M. Lange Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)U. Scholz Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)
P 17	Lipoxygenases could facilitate pathogen host jumps between plants and humans Poster Bioinformatics G. Kurakin Presenter Tver State Medical University
P 18	tidysq — tidy and efficient storage and processing of biological sequences Poster Bioinformatics M. Bąkała Presenter Warsaw University of TechnologyD. Rafacz Presenter Warsaw University of TechnologyJ. Słowik Warsaw University of TechnologyM. Burdukiewicz Medical University of Białystok
P 19	DeePSIVal: Decoy-free peptide spectrum match validation using a deep learning approach Poster Bioinformatics K. Schallert Presenter Otto-von-Guericke University MagdeburgD. Micheel Otto-von-Guericke University MagdeburgR. Heyer Otto-von-Guericke University MagdeburgG. Saake Otto-von-Guericke University MagdeburgU. Reichl Max Planck Institute for Dynamics of Complex Technical Systems MagdeburgD. Benndorf Otto-von-Guericke University Magdeburg
P 20	Local DNA shape is a general principle of transcription factor binding specificity in Arabidopsis thaliana Poster Bioinformatics J. Sielemann Presenter Bielefeld UniversityD. Wulf Bielefeld University/CeBiTecR. Schmidt Bielefeld University/CeBiTecA. Bräutigam Bielefeld University/CeBiTec
P 21	Transcriptomics to characterize the role of chromatin modifiers and transcription factors in multicellular development of fungi Poster Bioinformatics R. Lütkenhaus Ruhr-University BochumJ. Breuer Ruhr-University BochumM. Nowrousian Presenter Ruhr-University Bochum
P 22	Evaluating Tools for Automatic Reconstruction of Clonal Evolution Poster Bioinformatics S. Sandmann Presenter Westfälische Wilhelms-Universität Münster, Institut für Medizinische InformatikS. Richter Westfälische Wilhelms-Universität Münster, Institut für Medizinische InformatikX. Jiang Westfälische Wilhelms-Universität Münster, Institut für InformatikJ. Varghese Westfälische Wilhelms-Universität Münster, Institut für Medizinische Informatik
P 23	Systems biology modelling in Cystic Fibrosis to predict possible drug targets and active compound combinations Poster Bioinformatics L. Vinhoven Presenter University Medical Center GöttingenF. Stanke Hannover Medical SchoolS. Hafkemeyer Mukoviszidose Institut gGmbH (MI)M. Nietert University Medical Center Göttingen
P24	PepGM: A probabilistic graphical model for taxonomic profiling of viral proteomes Poster Bioinformatics T. Holstein Presenter Bundesanstalt für Materialforschung - und PrüfungL. Martens Ghent University (UGent)T. Muth Bundesanstalt für Materialforschung - und Prüfung
P25	Molecular identification and phylogenetic analysis using COI gene of non-penaeid shrimps from Mumbai, India. Poster Bioinformatics R. KAUR Presenter MUMBAI UNIVERSITYG. UPPAL MUMBAI UNIVERSITYT. SAWANT MUMBAI UNIVERSITY
P26	InterCellar empowers lab-scientists in the downstream analysis of cell-cell communication from single-cell transcriptomics Poster Bioinformatics M. Interlandi Presenter University of MünsterK. Kerl University Children’s Hospital MünsterM. Dugas Heidelberg University Hospital
P27	Explainable modular Neural Network architecture to predict important pathways based on simulated expression dat Poster Bioinformatics J. Oldenburg Presenter Institute of Bioinformatics, University Medicine GreifswaldS. Simm Institute of Bioinformatics, University Medicine Greifswald
P28	Bioinformatics analysis of periodicity in proteins with coiled-coil structure Poster Bioinformatics S. Schuster Presenter University of JenaA. Then University of JenaH. Zhang University of Jena
P29	Statistical analysis of ‘stop-stop’ ORFs in eukaryotes Poster Bioinformatics V. Wesp Presenter Friedrich-Schiller Universität JenaS. Schuster Friedrich-Schiller Universität Jena
P30	BugCube – A database for large microscopy datasets of embryonic development in insects Poster Bioinformatics A. Berghoff Goethe UniversityF. Krämer Presenter Goethe UniversityK. Trares Heidelberg UniversityF. Strobl Goethe UniversityE. Stelzer Goethe University
P31	Protein stability with respect to chemical modifications. Example: SARS-Cov 2 Poster Bioinformatics H. Stark Presenter Friedrich-Schiller-University JenaM. Fichtner Friedrich-Schiller-University JenaS. Schuster Friedrich-Schiller-University Jena
P32	Prediction of Intrinsic Transcription Terminators using Deep Learning Methods Poster Bioinformatics V. Brandenburg Presenter Ruhr-University BochumF. Narberhaus Ruhr-University BochumA. Mosig Ruhr-University Bochum
P33	Semi- and fully-automated root image analysis and phenotyping Poster Bioinformatics N. Narisetti Presenter Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)C. Seiler Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)J. Ostermann Leibniz Universität HannoverT. Altmann Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)E. Gladilin Presenter Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)
P34	Comparison of wild and cultivated beets regarding repeats and transposon insertion polymorphisms. Poster Bioinformatics L. Blazek Presenter DBT - University of Natural Resources and Life Sciences (BOKU)J. Dohm DBT - University of Natural Resources and Life Sciences (BOKU)H. Himmelbauer DBT - University of Natural Resources and Life Sciences (BOKU)
P35	Patient-specific identification of genome-wide methylation differences between intra- and extracranial melanoma metastases Poster Bioinformatics T. Kraft Presenter TU DresdenK. Grützmann TU DresdenM. Meinhardt University Hospital Carl Gustav Carus, TU DresdenD. Westphal University Hospital Carl Gustav Carus, TU DresdenS. Michael TU Dresden
P36	Advancements of long-read sequencing and its application to decode a wild barley accession Poster Bioinformatics B. Thakkar Presenter Martin Luther University Halle-WittenbergS. Conert Presenter Martin Luther University Halle-WittenbergA. Maurer Martin Luther University Halle-WittenbergK. Pillen Martin Luther University Halle-WittenbergT. Schmutzer Martin Luther University Halle-Wittenberg
P37	Assembling highly repetitive Xanthomonas TALomes Poster Bioinformatics A. Erkes Presenter Martin Luther University Halle-WittenbergR. Grove Leibniz Universität HannoverM. Žarković Friedrich Schiller UniversityS. Krautwurst Friedrich Schiller UniversityR. Koebnik Plant Health InstituteM. Hölzer Robert Koch InstituteM. Marz Friedrich Schiller UniversityJ. Boch Leibniz Universität HannoverJ. Grau Martin Luther University Halle-Wittenberg
P38	Cancer Hallmarks-based Biomarkers Poster Bioinformatics C. Ozen Presenter Technical University DresdenN. Afrin Technische Universität DresdenA. Al-Fatlawi TU DresdenM. Schroeder TU Dresden
P39	Understanding the sequence-specific dynamics of nucleosome positioning and transcription factor interaction using random forests Poster Bioinformatics M. Sahrhage Presenter University Medical Center GöttingenM. Haubrock University Medical Center GöttingenT. Beißbarth University Medical Center Göttingen
P40	A Landscape of Single Amino Acid Variants in Melanoma Poster Bioinformatics B. Szeitz Presenter Semmelweis UniversityM. Kuras Lund UniversityJ. Rodriguez Karolinska InstituteJ. Eriksson Lund UniversityZ. Horvath Lund UniversityA. Szász Semmelweis UniversityM. Rezeli Lund UniversityP. Horvatovich University of GroningenL. Betancourt Lund UniversityG. Marko-Varga Lund University
P41	K-mer-based phylogeny of wild and cultivated beets Poster Bioinformatics F. Wascher Presenter University of Natural Resources and Life Science, ViennaN. Stralis-Pavese University of Natural Resources and Life Science, ViennaB. Schulz KWS SAAT SE & Co. KGaAH. Himmelbauer University of Natural Resources and Life Science, ViennaJ. Dohm University of Natural Resources and Life Science, Vienna
P42	Analysis of sugar beet and wild beet genomes to study relationships, origins, population dynamics and selection Poster Bioinformatics S. Felkel Presenter BOKU-University of Natural Resources and Life Sciences ViennaN. Stralis-Pavese BOKU-University of Natural Resources and Life Sciences ViennaB. Schulz KWS SAAT SE & Co. KGaAJ. Dohm BOKU-University of Natural Resources and Life Sciences ViennaH. Himmelbauer BOKU-University of Natural Resources and Life Sciences Vienna
P43	Correcting for NK Cells in Acute Myeloid Leukemia Cell Type Mixtures Using NNLS Poster Bioinformatics C. Andresen Presenter DKFZ/HI-STEME. Donato DKFZ/HI-STEMN. Correia DKFZ/HI-STEMA. Trumpp DKFZ/HI-STEMD. Hübschmann DKFZ/HI-STEM/NCT
P44	Implementation of a scalable SARS-CoV-2 NGS data processing, variant calling and correlation analysis pipeline with snakemake Poster Bioinformatics D. Hruska Technische Hochschule BingenN. Wendel Presenter Technische Hochschule BingenZ. Görmez Technische Hochschule BingenA. Krause Technische Hochschule BingenM. Lehmann Technische Hochschule Bingen
P45	Interpretable deep learning for phage life cycle prediction Poster Bioinformatics M. Nowicka Presenter Hasso Plattner Institute, Digital Engineering Faculty, University of PotsdamJ. Bartoszewicz Hasso Plattner Institute, Digital Engineering Faculty, University of PotsdamB. Renard Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam
P46	De novo assembly of Humulus lupulus transcriptome comparing different bioinformatic tools Poster Bioinformatics S. Ranganathan Presenter Deggendorf Institute of TechnologyD. Riewe Julius Kühn-InstitutA. Feiner Simon H. Steiner, Hopfen, GmbHM. Kappelmann-Fenzl Deggendorf Institute of TechnologyS. Fischer Deggendorf Institute of Technology
P47	Classification of TFBS based on position-specific evolutionary sequence information Poster Bioinformatics H. Timucin Presenter University Medical Center GöttingenC. Ickes Georg August UniversitätM. Haubrock University Medical Center GöttingenM. Sahrhage University Medical Center GöttingenT. Beißbarth University Medical Center Göttingen
P48	Experimental determination and data-driven prediction of homotypic transmembrane domain interfaces Poster Bioinformatics M. Teese Presenter Leukocare AGY. Xiao Technische Universität München (TUM)B. Zeng Technische Universität München (TUM)N. Berner Technische Universität München (TUM)D. Frishman Technische Universität München (TUM)D. Langosch Technische Universität München (TUM)
P49	Benchmarking of single-cell trajectory inference methods Poster Bioinformatics K. Neuser Presenter Institute of Medical Informatics, Westphalian Wilhelms University of MünsterM. Interlandi Institute of Medical Informatics, Westphalian Wilhelms University of MünsterJ. Varghese Institute of Medical Informatics, Westphalian Wilhelms University of MünsterC. Walter Institute of Medical Informatics, Westphalian Wilhelms University of Münster
P50	Investigation of the Effect of Chromatin Accessibility on the Co-Regulation in Biological Pathways Poster Bioinformatics N. Paul Presenter Georg-August-Universität Göttingen
P51	Towards a new taxonomic framework for decoding microbial communities from metagenomic data Poster Bioinformatics K. Block Presenter University Duisburg-EssenJ. Plewka University Duisburg-EssenT. Bornemann University Duisburg-EssenS. Eßer University Duisburg-EssenC. Moore University Duisburg-EssenA. Probst University Duisburg-Essen
P52	Pattern recognition and reconstruction in Mouse ICM Organoids via Machine learning Poster Bioinformatics R. Dirk Presenter Julius Maximilians University of WürzburgS. Schardt Julius Maximilians University of WürzburgM. Ankenbrand Julius Maximilians University of WürzburgS. Fischer Julius Maximilians University of Würzburg
P53	Statistical exploratory analysis of transposable element data Poster Bioinformatics L. Lopez Murillo Presenter Universidad Autónoma de ManizalesS. Orozco-Arias Universidad Autónoma de ManizalesA. Gaspar-Chiquitto Federal University of Technology - ParanáA. Paschoal Federal University of Technology - Paraná
P54	EcoMetEoR Poster Bioinformatics H. Uthe Friedrich Schiller University Jena and German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-LeipzigY. Poeschl Presenter Friedrich Schiller University Jena and German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-LeipzigN. van Dam Friedrich Schiller University Jena and German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig
P55	Modeling and deciphering the regulation of microbial central metabolism by dynamic optimization Poster Bioinformatics W. Dimitriew Presenter Department of Bioinformatics, Friedrich Schiller University JenaS. Schuster Department of Bioinformatics, Friedrich Schiller University JenaJ. Ewald Department of Bioinformatics, Friedrich Schiller University Jena
P56	Mantis: flexible and consensus-driven genome annotation Poster Bioinformatics P. Queiros Presenter University of Luxembourg
P57	A probabilistic framework for context-specific transcriptional regulation analysis of biosynthetic gene clusters Poster Bioinformatics M. Banf Presenter EducatedGuess.ai
P58	binny: an automated binning algorithm to recover high-quality genomes from complex metagenomics datasets Poster Bioinformatics O. Hickl Presenter University of LuxembourgP. May University of LuxembourgA. Heintz-Buschart University of Amsterdam